The REPPTIS and PPTIS sections

A partial-path simulation reads these settings from the section named after its task: task = "repptis" from [repptis] and task = "pptis" from [pptis]. Both sections carry the same keyword. The TIS section also has to be defined for a partial-path simulation.

[simulation]
task = "repptis"

[repptis]
memory = 1

The shooting_moves keyword states which moves a partial-path task accepts.

Keywords for the REPPTIS and PPTIS sections

The following keyword can be set for either section:

Table 33 Keywords for the REPPTIS and PPTIS sections.

Keyword	Description
memory	Set how far the local window of each positive ensemble reaches.

Keyword memory

memory = integer

Sets the local interface window each positive ensemble samples in. With memory = m, ensemble \(i\) samples the window \([\lambda_{i-m}, \lambda_i, \lambda_{i+m}]\), and the paths it holds are the partial paths that window bounds. The analysis rebuilds the kinetics from the crossing probabilities of these local windows.

Default

The default value is 1.